GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:26:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mouse DNA sequence from clone RP23-47P18 on chromosome 2.
AL732557.4:158967-158985
AGGTAAGGTCTTCTGGAAATTATGGCCTTG158967TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971562.1:22484891-22484909
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22484891TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971574.1:22465144-22465162
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22465144TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971595.1:22568343-22568361
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22568343TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus domesticus genome assembly, chromosome: 2.
OW971624.1:22322819-22322837
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22322819TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACATGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971637.1:22462008-22462026
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22462008TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus molossinus genome assembly, chromosome: 2.
OW971659.1:22279818-22279836
AAGGTAAGGTCTTCTGGAAATTATGGCCTG22279818TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus molossinus genome assembly, chromosome: 10.
OW971667.1:69828503-69828521
ATCTTGAAGGATGGTTAGTAATTAGATTTA69828503TGAAGGCAGAGAGGAAGCTAAGCAGAGATTCTTCTTCCCCTAGCTCCAA
Mus spretus genome assembly, chromosome: 2.
OW971679.1:23064221-23064239
AGGTAAGGTCTTCTGGAAATTATGGCCTTG23064221TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCAAGACCCTG
Mus spretus genome assembly, chromosome: 10.
OW971686.1:69955157-69955175
ATCTTGAAGGGTGGTTAGTAATTAGATTTA69955157TGAAGGCAGAGAGGAAGCTAAGCAGAGATTCTTCTTCCCCTAGCTCCAA
Mus musculus genome assembly, chromosome: 2.
OW971710.1:22218980-22218998
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22218980TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971721.1:22360362-22360380
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22360362TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971742.1:22450518-22450536
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22450518TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus musculus genome assembly, chromosome: 2.
OW971763.1:22377302-22377320
AAGGTAAGGTCTTCTGGAAATTATGGCCTG22377302TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus musculus genome assembly, chromosome: 10.
OW971770.1:68266930-68266948
ATCTTGAAGGATGGTTAGTAATTAGATTTA68266930TGAAGGCAGAGAGGAAGCTAAGCAGAGATTCTTCTTCCCCTAGCTCCAA
Mus musculus genome assembly, chromosome: 2.
OW971784.1:22455582-22455600
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22455582TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971805.1:22364719-22364737
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22364719TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus castaneus genome assembly, chromosome: 10.
OW971826.1:68139295-68139313
ATCTTGAAGGGTGGTTAGTAATTAGATTTA68139295TGAAGGCAGAGAGGAAGCTAAGCAGAGATTCTTCTTCCCCTAGCTCCAA
Mus musculus castaneus genome assembly, chromosome: 2.
OW971836.1:22210870-22210888
AAGGTAAGGTCTTCTGGAAATTATGGCCTG22210870TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OW971855.1:22426161-22426179
AGGTAAGGTCTTCTGGAAATTATGGCCTTG22426161TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OX389796.1:32046774-32046792
AGGTAAGGTCTTCTGGAAATTATGGCCTTG32046774TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OX390146.1:24296352-24296370
AGGTAAGGTCTTCTGGAAATTATGGCCTTG24296352TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Mus musculus genome assembly, chromosome: 2.
OX439015.1:29404079-29404097
AGGTAAGGTCTTCTGGAAATTATGGCCTTG29404079TGAAGGCAGAGAGGAAGCTCAGCATGGTGCACACGCCTGCGAGACCCTG
Chionomys nivalis genome assembly, chromosome: 9.
OX465457.1:14607389-14607407
TCATGGATGACGTAGTGTGTGAGTGGGGTG14607389TGAAGGCAGAGAGGAAGCTTTCCATGTGTGTCAGGGAACGAATGAGGGT
Micromys minutus genome assembly, chromosome: 14.
OZ004794.1:50835914-50835932
ACAGTTTGAGAGGACTGTTCATCCTGTCAG50835914TGAAGGCAGAGAGGAAGCTCTGGCTGCTGGTCACATGGCATCCACAGGC
Canis lupus genome assembly, chromosome: 32.
HG994414.1:16324527-16324545
GAAGTTAAGGATAGAAGCAAATAGAAACAT16324527TGAAGGCAGAGAGGAAGCTGAGAGTCAAAAAAGAAAAGAAAAGAAAGAA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 10.
OX459946.2:53087619-53087637
TCAAAAGATCTTTTTCCTTGACAAGGTCAC53087619TGAAGGCAGAGAGGAAGCTGTATCTTACTGGGAACATATGCTCTGTGCA
Sylvilagus floridanus genome assembly, chromosome: 19.
OX463241.1:84178837-84178855
GAGAGCAGAGGCAGAGATCATTGACAAAAG84178837TGAAGGCAGAGAGGAAGCTTGGAGAGGGCTGACTTTTACAATTTTGGAC
Rangifer tarandus platyrhyncus genome assembly, chromosome: 10.
OX596094.1:50633130-50633148
TCAAAAGATCTTTTTCCTTGACAAGGTCAC50633130TGAAGGCAGAGAGGAAGCTGTATCTTACTGGGAACATATGCTCTGTGCA
Cottoperca gobio genome assembly, chromosome: 2.
LR131927.1:11194489-11194507
CGTCAGGTCCATCGTTCAAAGCCAGCAACC11194489TGAAGGCAGAGAGGAAGCTCGAGTTCATGCCAACCAACCTACACATTCA
Betta splendens genome assembly, chromosome: 2.
LR132025.3:989622-989640
CATCAGGTCCATCATTCAAAGCAAGTAACT989622TGAAGGCAGAGAGGAAGCTGGAGTTCATGCCAACCAACCTACACACACA
Rhinatrema bivittatum genome assembly, chromosome: 4.
LR584390.1:301802421-301802439
AGGTAGTGGATGCTGGGTAGATGCTGTGAG301802421TGAAGGCAGAGAGGAAGCTGGGTGAGTGGGAAAGTTATGTCTAGAGGGT
Salmo trutta genome assembly, chromosome: 6.
LR584406.1:52561741-52561759
CTCCAGGTCCGTCGTTCAAGGCCAGTAACC52561741TGAAGGCAGAGAGGAAGCTGGAGTTCATACCCACCAACCTTCATGTCCA
Geotrypetes seraphini genome assembly, chromosome: 16.
LR699161.1:51527315-51527333
ATGGAGTAAAGAGAAATGAAAGAAAGAACA51527315TGAAGGCAGAGAGGAAGCTAAAGAGAAGATGCAATAAACAGAGACTGAG
Thalassophryne amazonica genome assembly, chromosome: 1.
LR722966.1:152917477-152917495
AAATTTGTGCTGCCGGACACCCACTTACAG152917477TGAAGGCAGAGAGGAAGCTTTTACAAACTTTCACCACCTTAACTGATTT
Scyliorhinus canicula genome assembly, chromosome: 13.
LR744042.1:44248565-44248583
GATATTGAGAGAGGGACAGAGGGCGGGAGC44248565TGAAGGCAGAGAGGAAGCTGGAAGCAGGATTCCGGGTAAAACTCCTCTT
Trachurus trachurus genome assembly, chromosome: 2.
LR991651.1:12616657-12616675
CCCCAGGTCCGTCGTTCAAAGCCAGTAACC12616657TGAAGGCAGAGAGGAAGCTGGAGTTCATGCCGACCAACCTCCACGTTCA
Astatotilapia calliptera genome assembly, chromosome: 15.
LS420033.2:24726396-24726414
TTTCCAATAGCTGCTCCTCCGAGAAGCTTC24726396TGAAGGCAGAGAGGAAGCTGACGCGCGTAAAGAGGGGGGAGGCACCGCT
Pholis gunnellus genome assembly, chromosome: 24.
OU342827.1:1982732-1982750
CGTCAGGTCCATCGTTCAAAGCCAGTAACC1982732TGAAGGCAGAGAGGAAGCTTGAGTTCATGCCAACCAACCTACACGTGCA
Symphodus melops genome assembly, chromosome: 23.
OX393547.1:5102146-5102164
CGTCAGGTCCTTCTTTCAAAGCCAGCAACC5102146TGAAGGCAGAGAGGAAGCTGGAGTTCATGCCAACCAACCTGCACGTTCA
Eutrigla gurnardus genome assembly, chromosome: 24.
OY741287.1:1523705-1523723
CGTCAGGTCCATCGTTCAAAGCCAGTAACC1523705TGAAGGCAGAGAGGAAGCTTGAGTTCATGCCAACCAACCTACACGTGCA
Neolamprologus multifasciatus genome assembly, chromosome: 15.
OY755020.1:25452240-25452258
TTTCCAATAGCTGCTCCTCCGAGAAGCTTC25452240TGAAGGCAGAGAGGAAGCTGACGCGCGCAAAGAGGGGGGAGGCACCGCT
Echiichthys vipera genome assembly, chromosome: 23.
OY829668.1:4439993-4440011
CCTCAGGTCCATCTTTCAAAGCCAGTAACC4439993TGAAGGCAGAGAGGAAGCTCGAGTTCATGCCAACCAACCTACATGTTCA
Scomber scombrus genome assembly, chromosome: 24.
OY829941.1:4540893-4540911
CATTAGGTCCATCATTCAAAGCCAGTAACC4540893TGAAGGCAGAGAGGAAGCTGGAGTTCATGCCAACCAACCTACACGTACA
Scophthalmus maximus genome assembly, chromosome: 1.
OY978252.1:23628884-23628902
TGTCAGGTCCGTCATTCAAAGCCAGTAACC23628884TGAAGGCAGAGAGGAAGCTGGAGTTCATGCCAACCAACCTACATGTTCA
Thunnus thynnus genome assembly, chromosome: 24.
OZ004755.1:14752283-14752301
CTTCAGGTCCATCATTCAAAGCCAGTAACC14752283TGAAGGCAGAGAGGAAGCTGGAGTTCATGCCAACCAACCTACATGTACA
Manihot esculenta mRNA, clone: CAS01_015_B15, 5'end.
DB925139.1:462-480
TACTGAGATAGCAGAAGAAACTGAGAATAC462TGAAGGCAGAGAGGAAGCTCAAGTCAGAGAAAAGCTCAATATAGTTTTT
U_UZ-100602_plate30c13.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG997297.1:504-522
TACTGAGATAGCAGAAGAAACTGAGAATAC504TGAAGGCAGAGAGGAAGCTCAAGTCAGAGAAAAGCTCAATATAGTTTTT
TSA: Anoplopoma fimbria afim-6130312 mRNA sequence.
JO683549.1:229-247
ACAGAGGTCCATCGTTCAAAGCCAGTAACC229TGAAGGCAGAGAGGAAGCTCGAGTTCATGCCAACCAACCTACACGTGCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:179704188-179704206
ATGATTTAATTAAGTAATGGTTTTTAGTCA179704188TGAAGGCAGAGAGGAAGCTAAGTCATTGGAAATCATATAGATGGAAAGG
Manihot esculenta starch synthase isoform I (SSI) mRNA, complete cds.
EF667960.1:359-377
TACTGAGATAGCAGAAGAAACTGAGAATAC359TGAAGGCAGAGAGGAAGCTCAAGTCAGAGAAAGGCTCAATATAGTTTTT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
HG994380.1:223106351-223106369
GAAAGTATGGGCATGAGAACTGTGGTGCAA223106351TGAAGGCAGAGAGGAAGCTTTGATGCATATGTTTTGGAACTAGACGTGT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX590747.1:282972851-282972869
GAAAGTATGGGCATGAGAACTGTGGTGCAA282972851TGAAGGCAGAGAGGAAGCTTTGATGCATATGTTTTGGAACTACACGTGT
Isoperla grammatica genome assembly, chromosome: 2.
OX246738.1:28175441-28175459
CAAGAGTTGAATGGAGCCTTGTTGTGTGGG28175441TGAAGGCAGAGAGGAAGCTTTTAGCGACACCACAGCTTTCAATCTGGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAAGGCAGAGAGGAAGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAGGCAGAGAGGAAGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.495 | 0.486 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAGGCAGAGAGGAAGCT&k=0&no_gap=0&offset=0&limit=50
0.641 | 0.146 | search_minus_done; http://172.18.8.135:50400/match?q=AGCTTCCTCTCTGCCTTCA&k=0&no_gap=0&offset=0&limit=0
0.641 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).